催化学报 ›› 2021, Vol. 42 ›› Issue (10): 1625-1633.DOI: 10.1016/S1872-2067(21)63798-1
• 述评 • 下一篇
收稿日期:
2021-02-07
接受日期:
2021-03-04
出版日期:
2021-06-20
发布日期:
2021-04-25
通讯作者:
戈钧
作者简介:
*电话: (010)62780775; 电子信箱:junge@mail.tsinghua.edu.cn基金资助:
Received:
2021-02-07
Accepted:
2021-03-04
Online:
2021-06-20
Published:
2021-04-25
Contact:
Jun Ge
About author:
Professor Jun Ge (Department of Chemical Engineering, Tsinghua University) received his B.S. degree in 2004 and Ph.D degree in 2009 from Tsinghua University. From 2009 to 2012, he did postdoctoral research at Stanford University. In 2012, he joined the faculty of Department of Chemical Engineering, Tsinghua University. His research interests currently focus on enzymatic catalysis and enzyme-metal cooperative catalysis with emphasis on design of new biocatalysts, enzyme catalyst engineering and asymmetric synthesis of pharmaceutical intermediates and fine chemicals by biocatalysis. Some of his recent progresses include the design of novel hybrid catalyst to combine lipase and Pd clusters to achieve the dynamic kinetic resolution of amines, the novel approach of enzymatic catalysis in cells to achieve the detection of specific intracellular metabolites in single cells. He has coauthored about 60 peer-reviewed papers, some of which were published in Nature Catalysis, Nature Nanotechnology, Science Advances, Nature Communications, etc. He has been issued with 10 patents. He joined the editorial board of Chin. J. Catal. as the Associate Editor in 2020.
Supported by:
摘要:
工业生物催化面临两大重要挑战, 一是可工业应用的酶催化反应类型仍然比较有限, 远少于化学催化剂, 因此需要拓展酶催化的反应类型; 二是酶在苛刻的工业催化反应条件下尤其是在高温、有机溶剂、不适宜的pH等环境下稳定性较差, 因此需要提高工业酶催化剂的稳定性. 研究者已经开发了很多方法, 以解决这两方面难题, 例如酶的定向进化、定点突变、酶的计算机从头设计和构建人工金属酶等.
本文系统介绍了本课题组开发的酶复合催化剂原位合成方法及其生物催化应用, 期望为解决工业生物催化的上述挑战提供新思路. 原位合成是构建酶-无机晶体复合催化剂的一种简便、高效、普适的方法. 酶-无机晶体复合物中, 限域包埋使酶具有高于常规固定化酶的催化活性和稳定性. 该方法可以简便拓展至其它多种类型的无机晶体材料, 显著提高酶的稳定性. 无机晶体的限域包埋对酶分子结构和性能有着重要影响, 通过理性设计复合催化剂的结构, 可实现对酶的活性、稳定性以及多酶反应级联效率的有效调控. 本课题组采用分子模拟和实验相结合的方法阐释了多酶-无机晶体复合催化剂所驱动的级联反应效率提高的关键因素. 通过调控原位合成中金属离子和有机配体的浓度, 实现了酶分子在缺陷型甚至无定形载体中的包埋. 在此基础上, 深入探讨了缺陷对酶分子结构和催化活性的调控机制, 为酶复合催化剂的理性设计提供了依据.
同样基于原位合成方法, 本课题组构建了酶-金属团簇复合催化剂, 实现了温和条件下酶催化和金属催化的高效耦合和协同. 以脂肪酶-钯团簇复合催化剂为例, 阐明了酶-金属团簇复合催化剂中二者相互作用对酶分子结构和活性以及金属催化活性的影响机制, 为酶催化和金属催化相融合的研究提供了重要基础. 我们对这一领域存在的挑战和未来重要的研究方向也进行了讨论, 希望本文可以从催化剂工程角度为高效酶催化剂的设计以及生物催化应用领域的拓展提供新思路, 推动该领域发展.
曹宇飞, 戈钧. 酶复合催化剂原位合成新方法及生物催化应用[J]. 催化学报, 2021, 42(10): 1625-1633.
Yufei Cao, Jun Ge. Hybrid enzyme catalysts synthesized by a de novo approach for expanding biocatalysis[J]. Chinese Journal of Catalysis, 2021, 42(10): 1625-1633.
Fig. 1. (A) Single enzyme molecules are encapsulated in nanogels by surface acryloylation of a protein molecule followed by aqueous in situ polymerization. (B) Based on the analysis of enzyme sequences and the characteristic chemical patterns on enzyme surfaces, four-monomer random heteropolymers to mimic intrinsically disordered proteins are designed for enzyme solubilization and stabilization in nonnative environments. Reproduced with permission [18]. Copyright 2018, American Association for the Advancement of Science. (C) Enzyme molecules are directly embedded in inorganic crystals by a coprecipitation method. (D) In situ generation of Pd nanoparticles/clusters in a confined environment of a single lipase-polymer conjugate.
Fig. 2. (A) Scanning electron microscopy (SEM) images of calcinated Cyt c@ZIF-8. (B) The relative peroxidase activities of Cyt c, Cyt c@ZIF-8 composite, PVP/Cyt c mixture, Cyt c/zinc ion mixture, Cyt c/2-methylimidazole mixture, and Cyt c/ZIF-8 mixture. Reproduced with permission [21]. Copyright 2014, American Chemical Society. (C) NU-1000 encapsulation changes the coordination of the Cyt c heme active site. Probability distributions, P(D), of the N (His 18), S (Met 80), and C (Pro 30) distances relative to Fe in bulk. (D) Corresponding probability distributions inside MOF NU-1000. (E) The configurations of Cyt c in water. (F) The configurations of Cyt c inside MOF NU-1000. Reproduced with permission [23]. Copyright 2020, American Chemical Society. (G) Schematic illustration of the enzymatic cascade catalyzed by GOx/HRP@ZIF-8. (H) The relative overall activity of the enzyme cascade catalyzed by GOx/HRP_dx@ZIF-8 (x = 23, 17, 15, 13, 11, 10) without CAT or (I) with CAT. (J) Reaction kinetics (number of products, np, versus simulation time) of different radii of enzyme clusters, r = 5, 6, 7, 8, 9, 10, 11(σ) without intermediate decay or (K) with intermediate decay. Reproduced with permission [46]. Copyright 2019, Royal Society of Chemistry.
Fig. 3. (A) Cryo-electron tomography (Cryo-ET) reconstruction and magnified image of a single GOx-aZIF composite. (B) Structure of aZIF by molecular simulations (insets: schemes showing coordination). (C) Density functional theory (DFT) pore size distribution of ZIF-8, amorphous ZIF, and GOx-incorporated amorphous ZIF. (D) X-ray total scattering data and synchrotron radiation X-ray pair distribution function (PDF) of aZIF and ZIF-8. (E) Enzymatic activities of enzyme-ZIF-8 and enzyme-incorporated amorphous ZIFs, including GOx, Candida antarctica lipase B (CALB) and catalase (CAT). Reproduced with permission [52]. Copyright 2019, Springer Nature. (F) Thermal stability of free native HRP and HRP-MOF composites at 60 and 70 °C, respectively. Reproduced with permission [53]. Copyright 2020, American Association for the Advancement of Science.
Fig. 4. (A) Structure of the CALB-Pluronic conjugate with a Pd cluster and principles of DKR of amines catalyzed by CALB and Pd cluster. (B) Structure of the CALB-Pluronic conjugate in benzene. (C) Enzyme activities of Pd/CALB-P hybrid catalyst assayed by ester hydrolysis. (D) Fluorescence spectra of CALB, CALB-P conjugates and xPd/CALB-P hybrid catalysts (x = 0.8, 1.6, 2.2 and 2.5). (E) Free-energy profiles for (S)-1-PEA racemization on pristine Pd(111) and partially oxidized Pd(111) surfaces. (F) Catalytic performance of 0.8Pd/CALB-P at 55 °C and of a combination of commercially available Novozym 435 and Pd/C at 70 and 55 °C for the DKR reactions. (G) Conversions and ee values in ten cycles of the reaction using 0.8Pd/CALB-P as the catalyst. Reproduced with permission [56]. Copyright 2019, Springer Nature.
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